How much does Flagship Pioneering pay?
As of Oct 17, 2026, 83 of the 96 open jobs Flagship Pioneering has on Alion state a salary. The median is $205k a year, and the middle half pays $165k to $259k. The best-paid open role is Senior Director / Vice President, Machine Learning (Generative Chemistry) at $413k. Flagship Pioneering pays about 11% above the market for the same roles, levels and countries.
Flagship Pioneering pay against the market
+11% Flagship Pioneering pays about 11% above the market for the same roles, levels and countries.
Each of 115 postings is compared with the median stated pay for its role, level and country across all employers on Alion; the middle ratio, drawn toward the market when few postings back it, gives the figure.
Flagship Pioneering pay by level
| Level | Jobs | Median | Typical range |
|---|---|---|---|
| Senior | 24 | $176k | $160k – $190k |
| Head+ | 23 | $275k | $237k – $320k |
| Lead | 16 | $237k | $209k – $286k |
| Junior | 8 | $99k | $94k – $127k |
| Middle | 7 | $94k | $94k – $130k |
Flagship Pioneering pay by role
| Role | Jobs | Median | Typical range |
|---|---|---|---|
| Science & Research | 28 | $170k | $107k – $236k |
| Leadership | 7 | $253k | $237k – $347k |
| Legal | 7 | $237k | $176k – $237k |
| AI/ML | 6 | $286k | $206k – $286k |
| Sales | 6 | $270k | $237k – $275k |
| HR | 4 | $190k | $104k – $259k |
| Operations | 3 | $204k | $99k – $204k |
| DevOps | 3 | $171k | $130k – $171k |
Flagship Pioneering pay by city
| Location | Jobs | Median | Typical range |
|---|---|---|---|
| Cambridge | 79 | $206k | $170k – $259k |
| Boulder | 3 | $150k | $130k – $150k |
Flagship Pioneering pay by work format
| Work format | Jobs | Median | Typical range |
|---|---|---|---|
| In office | 80 | $204k | $165k – $259k |
How pay at Flagship Pioneering is spread
81 of 93 vacancies state a salary (87%). The range below is built from those 81 stated figures only, never from an estimate.
Best-paid open roles at Flagship Pioneering
| Senior Director / Vice President, Machine Learning (Generative Chemistry)Head+ | $413k |
| Vice President, EngineeringHead+ | $400k |
| Vice President, AI Research and Real-World EvidenceHead+ | $347k |
| Senior Strategic Transactions Lead, APEXLead | $346k |
| Strategic Transactions Counsel, APEXSenior | $346k |
| Vice President, Business DevelopmentHead+ | $331k |
| VP, Program Management & Business OperationsHead+ | $330k |
| Vice President, FinanceHead+ | $330k |
| Vice President, Translational BiologyHead+ | $320k |
| Vice President, Human ResourcesHead+ | $320k |
Questions about pay at Flagship Pioneering
What is the average salary at Flagship Pioneering?
The median salary stated in Flagship Pioneering job postings is $205k a year, across 81 open jobs with pay; the middle half pays $165k to $259k.
How much does Flagship Pioneering pay for Science & Research roles?
Science & Research roles at Flagship Pioneering state a median of $170k a year (28 postings with pay, middle half $107k – $236k).
How much does Flagship Pioneering pay for Leadership roles?
Leadership roles at Flagship Pioneering state a median of $253k a year (7 postings with pay, middle half $237k – $347k).
How much does Flagship Pioneering pay for Legal roles?
Legal roles at Flagship Pioneering state a median of $237k a year (7 postings with pay, middle half $176k – $237k).
How much does Flagship Pioneering pay in Cambridge?
Jobs at Flagship Pioneering in Cambridge state a median of $206k a year (79 postings with pay).
What is the highest-paying open job at Flagship Pioneering?
Right now it is Senior Director / Vice President, Machine Learning (Generative Chemistry) at Flagship Pioneering, with a stated $413k a year.
Does Flagship Pioneering pay above the market?
Flagship Pioneering pays about 11% above the market for the same roles, levels and countries. Each of 115 postings is compared with the median stated pay for its role, level and country across all employers on Alion; the middle ratio, drawn toward the market when few postings back it, gives the figure.
Does Flagship Pioneering publish salaries in its job postings?
86% of the open jobs Flagship Pioneering has on Alion state a salary: 83 of 96.
How to cite this page
Only pay an employer wrote in its own job advert is used, converted to US dollars a year; estimates are never mixed in. The figures are rebuilt twice a day from the vacancies open now.
These figures are published under a free licence. You may reuse them, including commercially, as long as you credit Alion and link back to this page.
Flagship Pioneering salaries: median $205k across 81 job postings with pay. Alion, Oct 17, 2026, https://alion.io/company/flagshippioneering/salaries