Bioinformatics Engineer II

Ambry Genetics • Bioinformatics • Health Care • Bachelor's Degree • Python • SQL • 28 days ago
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Salary
$90k – $140k per year
Location
Remote (United States)
Seniority
Middle · 5+ years exp
Employment
Full-Time
Overview
Company
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Ambry Genetics

Ambry Genetics is a company built by scientists, genetic counselors and physicians, dedicated to leading the clinical genomic diagnostic industry. Ambry boasts the largest genetic sequencing lab in the world; is CAP-accredited, CLIA-licensed and, as part of the Konica Minolta family, has access to the most complete suite of diagnostic technology in the world. Ambry Genetics' scope of clients includes some of the world's most respected academic institutions, pharmaceutical companies and leading treatment hospitals.
ambrygen.com • New York • Chicago • Genomics • Health Care • 501-1000 employees • Est. 1999

Compensation:

Pay Range: $90,000 - $140,000 USD

Essential Functions:

  • Drive technical solutions to problems, including end-to-end process flow from ideation to release, and estimating time and complexity

  • Design and develop custom software according to ticket specifications

  • Act as a role model for the team, settings standards for excellence and mentoring junior engineers

  • Provide clear and consistent feedback on code reviews

  • Meet with clients, partners, product owners, or other stakeholders to understand and clarify workflows and requirements

  • Highlight blockers or issues arising during development to resolve in a timely manner

  • Monitor process and log information, troubleshooting issues as needed

  • Other duties as assigned.

Qualifications:

  • Bachelor's degree (+ at least 5 years work experience), Master’s degree (+ at least 2 years work experience), or PhD degree in Bioinformatics, Computer Science, or a related field

  • Proficient in Python coding

  • Intermediate-to-advancedexperience working in Linux environments (e.g. compiling programs from source, performing text manipulations with pipes)

  • Intermediate-to-advancedexperience in relational databases (e.g., MySQL, PostgreSQL, Microsoft SQL Server)

  • Proficiency with software engineering best practices, including git version control, unit testing, and documentation

  • Knowledge of next-generation sequencing technologies and standard bioinformatics data formats (e.g., FASTQ, BAM, VCF, GTF)

  • Excellent communication and interpersonal skills.

Preferred:

  • Experience with cloud computing environment (AWS, Azure, Google Cloud)

  • Familiarity with Atlassian suite applications (Jira, Confluence, BitBucket)

  • Knowledge of clinical genetics databases (e.g., Clinvar, HGMD) and HGVS sequence variant nomenclatures

  • Prior experience in biology and/or an understanding of mutation analysis

  • Creating and developing Docker containers

  • Experience developing APIs

  • Experience with CI/CD (e.g. Bamboo, Jenkins, AWS Code Pipeline)

PRIVACY NOTICES

To review Ambry’s Privacy Notice, Click here: https://www.ambrygen.com/legal/privacy-policy

To review the California privacy notice, click here: California Privacy Notice | Ambry Genetics

To review the UKG privacy notice, click here: California Privacy Notice | UKG

Equal Opportunity Employer

This employer is required to notify all applicants of their rights pursuant to federal employment laws. For further information, please review the Know Your Rights notice from the Department of Labor.

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