{"id":3185154,"url":"https://alion.io/job/eli-lilly-and-company-advisor-automation-engineering","title":"Advisor, Automation Engineering","company":{"id":1753780,"name":"Eli Lilly and Company","domain":"lilly.com","url":"https://alion.io/company/lilly-com","size_band":"5000+","is_staffing_agency":false,"employer_type":"direct","is_intermediary":false,"listed_via":null,"ats_vendor":"Workday","truth_index":{"grade":"B","score":83,"open_postings":63,"ghost_share":0,"stale_share":0.698,"repost_share":0,"time_to_fill_p50_days":24,"computed_at":"2026-11-03T05:54:40Z"}},"role":"Industrial Engineering","role_family":"Industrial Engineering","seniority":"senior","employment_type":"full_time","work_mode":"on_site","remote_scope":null,"remote_scope_basis":null,"remote_working_hours":null,"hiring_geo_confidence":"structured","locations":["Indianapolis, United States"],"countries":["US"],"hiring_countries":[],"hiring_countries_total":0,"salary":{"min":130500,"max":211200,"currency":"USD","period":"year","gross":null,"usd_annual":211200},"salary_estimate":null,"experience_years_min":5,"visa_sponsorship":false,"relocation_package":false,"has_equity":false,"technologies":[{"name":"Benchling","optional":false},{"name":"LIMS","optional":false},{"name":"LLM","optional":false}],"status":"live","first_seen_at":"2026-10-23T23:18:45Z","employer_posted_date":"2026-10-23","last_verified_at":"2026-11-03T06:02:27Z","board_verified":true,"closed_at":null,"days_open":10,"trust":{"level":"ok","repost_count":null,"flags":[],"days_open":10},"description":"At Lilly, the work is demanding because patients are waiting. We unite caring with discovery to help make life better for people around the world, knowing that every decision, every detail, and every day matters. Headquartered in Indianapolis, Indiana, our over 50,000 employees around the globe take on complex challenges to discover and deliver life-changing medicines, strengthen how health is understood and managed, and support the communities we serve. This is hard, urgent, selfless work-but it’s work worth doing. If you’re driven by purpose and ready to bring your best to work that truly matters for patients, we invite you to join us.\nWe are seeking an Indianapolis-based senior automation engineer to join the Automation Engineering team within Lilly's RNA Therapeutics group. \nIn this role, the successful candidate will do the core technical work of building, deploying, and supporting laboratory automation that advances pipeline-facing science, with a particular focus on in vitro pharmacology and chemistry workflows. Equally important is the partnership side of the role: working closely with scientific users to understand their needs, supporting the systems they depend on, and enabling teams to get the most out of automation. This is a builder's role for someone who wants to be close to the bench and the instruments, and who takes satisfaction in seeing their systems genuinely adopted.\nThe ideal candidate is a skilled automation engineer who independently identifies the key technical problems in a workflow and develops practical solutions to solve them. They take pride in delivering systems that are intuitive and dependable for users with varying levels of automation experience, so that automation measurably improves the efficiency of their work. They bring sound engineering judgment, a methodical approach to qualification and reproducibility, a teamwork-minded approach to user support, and an interest in how emerging tools, including LLM-based coding assistants, can speed up method development and deployment.\nKey Responsibilities:\nBuild, program, deploy, and maintain laboratory automation systems supporting in vitro pharmacology, chemistry, and related pipeline workflows\nDevelop and validate automated methods, translating scientific protocols into robust, reproducible automated processes\nPartner directly with scientific users to gather requirements, understand their workflows, weigh practical tradeoffs, and deliver automation solutions that meet their needs\nDeploy and support automation systems tailored to specific pipeline processes and throughput needs\nProvide ongoing support for deployed systems, responding to user needs and keeping automation running reliably day to day\nDevelop clear documentation, quick-reference guides, and ongoing support resources that help teams operate automated workflows independently\nPlan and deliver hands-on training to local end users on new instrumentation, automated methods, and protocols, tailoring instruction to varying levels of automation experience and ensuring users can operate systems confidently and independently \nResolve hardware, software, and integration issues to keep systems running reliably\nStrengthen data reproducibility across automated processes through sound standards, controls, and qualification practices\nIntegrate automation with scheduling and lab orchestration software and with ELN/LIMS platforms such as Benchling\nApply LLM-based coding tools and agentic assistants to accelerate method development, scripting, and systems integration\nContribute to the generation of large-scale, structured datasets suitable for AI/ML applications\nBuild effective working relationships across scientific and engineering teams to ensure automation solutions fit real-world use\nBasic Qualifications:\nBachelor's degree in engineering, computer science, biological sciences, or related field with 5+ years of hands-on laboratory automation experience.\nAdditional Skills/Preferences:\nHands-on expertise with the Hamilton automation ecosystem and a track record of building and deploying integrated automation across other platforms (e.g. acoustic dispensers (e.g., Echo), oligonucleotide synthesizers, robotic arms, Tecan instruments)\nExperience automating in vitro pharmacology and chemistry workflows.\nStrong method development and qualificationskills, with a focus on reproducibility.\nDemonstrated ability to work directly with scientific users to gather requirements and support adoption.\nExperience with schedulers and end-to-end lab orchestration.\nExperience integrating automation with ELN/LIMS, such as Benchling.\nExperience with automated sample management systems.\nProficiency in scripting or programming for automation.\nExperience using LLM-based coding tools or agentic assistants to accelerate method development, scripting, or systems integration.\nStrong interpersonal skills, with a proven ability to build durable working relationships with scientific users.\nLilly is dedicated to helping individuals with disabilities to actively engage in the workforce, ensuring equal opportunities when vying for positions. If you require accommodation to submit a resume for a position at Lilly, please complete the accommodation request form (https://careers.lilly.com/us/en/workplace-accommodation) for further assistance. Please note this is for individuals to request an accommodation as part of the application process and any other correspondence will not receive a response.\nLilly is proud to be an EEO Employer and does not discriminate on the basis of age, race, color, religion, gender identity, sex, gender expression, sexual orientation, genetic information, ancestry, national origin, protected veteran status, disability, or any other legally protected status.\nOur employee resource groups (ERGs) offer strong support networks for their members and are open to all employees. Our current groups include: Africa, Middle East, Central Asia (AMECA), Black Employees at Lilly (BE@Lilly), Chinese Culture Network (CCN), EnAble, Evolve, Lilly Indian Network (LIN), Organization of Latinx at Lilly (OLA), Pride (LGBTQ+ Allies), Veterans Leadership Network (VLN) and Women’s Initiative for Leading at Lilly (WILL).\nActual compensation will depend on a candidate’s education, experience, skills, and geographic location. The anticipated wage for this position is\n$130,500 - $211,200Full-time equivalent employees also will be eligible for a company bonus (depending, in part, on company and individual performance). In addition, Lilly offers a comprehensive benefit program to eligible employees, including eligibility to participate in a company-sponsored 401(k); pension; vacation benefits; eligibility for medical, dental, vision and prescription drug benefits; flexible benefits (e.g., healthcare and/or dependent day care flexible spending accounts); life insurance and death benefits; certain time off and leave of absence benefits; and well-being benefits (e.g., employee assistance program, fitness benefits, and employee clubs and activities).Lilly reserves the right to amend, modify, or terminate its compensation and benefit programs in its sole discretion and Lilly’s compensation practices and guidelines will apply regarding the details of any promotion or transfer of Lilly 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