{"id":984028,"url":"https://alion.io/job/proteinqure-research-software-engineer","title":"Research Software Engineer","company":{"id":175993,"name":"ProteinQure","domain":"proteinqure.com","url":"https://alion.io/company/proteinqure","size_band":"51-200","is_staffing_agency":false,"employer_type":"direct","is_intermediary":false,"listed_via":null,"ats_vendor":"Greenhouse","truth_index":null},"role":"Backend","role_family":"Backend","seniority":"middle","employment_type":"full_time","work_mode":"on_site","remote_scope":null,"remote_scope_basis":null,"remote_working_hours":null,"hiring_geo_confidence":"explicit","locations":["Toronto, Canada"],"countries":["CA"],"hiring_countries":[],"hiring_countries_total":0,"salary":{"min":120000,"max":150000,"currency":"CAD","period":"year","gross":null,"usd_annual":105520},"salary_estimate":null,"experience_years_min":3,"visa_sponsorship":false,"relocation_package":false,"has_equity":false,"technologies":[{"name":"Linux","optional":false},{"name":"Machine Learning","optional":false},{"name":"Python","optional":false},{"name":"Kubernetes","optional":true}],"status":"live","first_seen_at":"2026-09-16T20:46:51Z","employer_posted_date":"2026-09-16","last_verified_at":"2026-10-20T11:53:31Z","board_verified":true,"closed_at":null,"days_open":33,"trust":{"level":"ok","repost_count":null,"flags":[],"days_open":33},"description":"About ProteinQure\nAt ProteinQure, we have built the best computational platform for peptides that target extracellular targets. Our mission is to help to create a world where drugs are engineered, not discovered. We work on treatments for cancer and other indications while also partnering with industry leaders in drug discovery to generate novel therapeutics outside of the conventional chemical space.\nOur technology combines computational biophysical models with statistical and machine learning approaches to enable us to search across vast spaces of protein therapeutics. We have worked with three of the top 25 pharma companies and have validated our tools on multiple targets. \nWe also have multiple internal programs, the most advanced being a First-in-Class peptide drug conjugate for TNBC, which is in a Phase 1 clinical trial including the best sites in North America. A second clinical program is expected within 3 years. Our other internal programs focus on using peptides as delivery vehicles for therapeutic payloads such as radioisotopes and siRNA.\nPosition: Research Software Engineer\nReports to: Head of Engineering\nStatus: Permanent\nExpected Compensation Range: $120,000 to $150,000 CAD annually, based on skills, qualifications, and relevant experience.\nThe Research Software Engineer is responsible for developing, maintaining, and supporting the software tools and computational workflows that enable ProteinQure’s drug discovery research. Working closely with scientists and engineers, they translate research needs into reliable, reproducible software, troubleshoot technical issues, and improve the performance and usability of the computational platform. The role combines hands-on software development with technical support for scientific users, along with ownership of scoped projects and contributions to testing, documentation, and shared engineering practices.\nThis job posting is to fill a new position. Artificial intelligence may be used to assist in the initial screening of resumes for this position. This process is supervised by a human, and hiring decisions are not made solely by artificial intelligence.\nKey responsibilities include:\nDevelopment, maintenance, and support for scientific computational workflows.\nDevelopment of computational tools for protein property prediction and optimization\nScoping computational resource requirements for internal and external research projects\nCollection of product requirements from scientists and translation into technical specifications\nSupporting development of machine learning models\nParticipating in code reviews and shared engineering practices; taking ownership of scoped improvements from requirements through deployment and ongoing support.\nRequired Knowledge, skills and abilities\n3-5 years of software development experience\nProficiency in Python and experience maintaining software used by others, including debugging, testing, and dependency management.\nExperience using AI-assisted development tools, with independent review, testing, and validation of generated code and appropriate handling of confidential information.\nFamiliarity with Linux environments, shell scripting, and troubleshooting software execution issues.\nAbility to prioritize development tasks alongside support requests, communicate tradeoffs, and recognize when to seek guidance.\n[Nice-to-have] Devops experience. Kubernetes experience. Experience with computer hardware / on-prem servers.\n [Nice-to-have] Experience in cell, molecular or protein biology. \nExcellent English communications skills, both verbal and written\nLegally able to work in Canada","description_format":"text","description_chars":3623,"description_truncated":false,"requirements":{"experience_years_min":3,"management_years_min":null,"team_size_min":null,"manages_managers":false,"education":null,"security_clearance":false,"languages":[{"language":"English","level":"Upper-Intermediate (B2)","optional":false}]},"benefits":[],"hiring_locations":[{"name":"Canada","iso":"CA","kind":"country"}],"hiring_excludes":[],"relocation_offered":false,"industries":["Drug Discovery","Drug Discovery AI","Oncology Therapeutics"],"lifecycle":[{"event":"open","at":"2026-09-16T22:44:06Z"}],"visa":[],"liveness":{"score":34,"band":"fade","label":"Fading","p_open":1,"p_active":0.625,"p_room":0.55,"age_days":33,"expected_fill_days":31,"reasons":["conf:2","win:tail"],"computed_at":"2026-10-20T05:45:00Z"},"pay":{"stated_usd_annual":105520,"is_top_pay":false},"html_url":"https://alion.io/job/proteinqure-research-software-engineer","json_url":"https://alion.io/job/proteinqure-research-software-engineer.json","meta":{"generated_at":"2026-10-20T14:27:35Z","cache_seconds":300,"methodology":"https://alion.io/methodology","terms":"https://alion.io/terms","contact":"https://alion.io/contact","api":"https://alion.io/developers","about":"Alion is a live layer of people, companies and AI agents: who they are, whether they are real and active right now, what they do and how to work with them, readable by people and by agents and paid per call.","catalog":"https://alion.io/catalog.json","usage":{"tier":"crawler_verified","counted_by":"address","units_charged":1,"used_today":16222,"day_limit":null,"remaining_today":null,"minute_limit":300,"resets_at":"2026-10-21T00:00:00Z"}},"offers":[{"id":"company.slices","title":"One company in depth, by slice","status":"live","price":{"credits":0.02,"usd":0.002,"plus_per_slice":{"credits":0.05,"usd":0.005}},"unit":"per company, plus each slice with data","note":"the employer in depth","call":{"mcp_tool":"get_company","arguments":{"id":175993},"rest":"https://alion.io/mcp/rest/get_company?id=175993"},"human":"https://alion.io/catalog?offer=company.slices&for=job%2Fproteinqure-research-software-engineer"},{"id":"market.stats","title":"A market slice: pay, demand and time to fill","status":"live","price":{"credits":1,"usd":0.1},"unit":"per slice","note":"pay, demand and time to fill for this role and place","call":{"mcp_tool":"market_stats"},"human":"https://alion.io/catalog?offer=market.stats&for=job%2Fproteinqure-research-software-engineer"},{"id":"job.search","title":"Open jobs by role, technology, place, pay and visa","status":"live","price":{"credits":0.02,"usd":0.002},"unit":"per posting in a list","note":"similar open postings","call":{"mcp_tool":"search_jobs"},"human":"https://alion.io/catalog?offer=job.search&for=job%2Fproteinqure-research-software-engineer"},{"id":"company.verify","title":"Is this company real and active right now","status":"pilot","price":null,"unit":"per company","request":{"url":"https://alion.io/catalog/request","method":"POST","body":"{\"offer\": \"company.verify\", \"for\": \"job/proteinqure-research-software-engineer\", \"note\": \"what you need it for\"}"},"human":"https://alion.io/catalog?offer=company.verify&for=job%2Fproteinqure-research-software-engineer"}]}