{"id":1330019,"url":"https://alion.io/job/protillion-biosciences-lead-instrument-software-engineer","title":"Lead Instrument Software Engineer","company":{"id":3782958,"name":"Protillion Biosciences","domain":"protillion.com","url":"https://alion.io/company/protillion-biosciences","size_band":"11-50","is_staffing_agency":false,"employer_type":"direct","is_intermediary":false,"listed_via":null,"ats_vendor":"Greenhouse","truth_index":null},"role":"Backend","role_family":"Backend","seniority":"lead","employment_type":null,"work_mode":"on_site","remote_scope":null,"remote_scope_basis":null,"remote_working_hours":null,"hiring_geo_confidence":"structured","locations":["Carlsbad, United States"],"countries":["US"],"hiring_countries":[],"hiring_countries_total":0,"salary":{"min":155000,"max":205000,"currency":"USD","period":"year","gross":null,"usd_annual":205000},"salary_estimate":null,"experience_years_min":8,"visa_sponsorship":false,"relocation_package":false,"has_equity":false,"technologies":[{"name":"Agile","optional":false},{"name":"Git","optional":false},{"name":"GitHub","optional":false},{"name":"Python","optional":false},{"name":"Windows","optional":false}],"status":"live","first_seen_at":"2026-01-06T00:10:52Z","employer_posted_date":"2026-01-12","last_verified_at":"2026-10-20T23:25:07Z","board_verified":true,"closed_at":null,"days_open":288,"trust":{"level":"stale","repost_count":0,"flags":["stale"],"days_open":287},"description":"About Us:\nJoin our dynamic and innovative team at Protillion Biosciences, where we are pioneering a revolutionary high-throughput system for therapeutic development. We are dedicated to transforming the landscape of drug discovery with cutting-edge technology and a collaborative work environment.\nAbout the Role:\nWe are seeking an experienced scientific instrument software engineer to lead software development of our advanced high-throughput protein analysis platform.\nJob Responsibilities:\nLead instrument control software development for a scientific instrument platform.\nWork closely with scientific and engineering peers, develop software development plans that include project objectives, scope, requirements, deliverables, schedule and milestones.\nBe directly responsible to drive execution of all aspects of the software development lifecycle: requirements analysis, architecture, design, coding, documentation, testing, deployment, configuration management, and sustainment.\nRequirements:\nBS/BA Computer Science, Computer Engineering, Electrical/Mechanical/Chemical Engineering or Physics with 8+ years’ experience, or MS/Ph.D. with 6+ years’ experience.\nExtensive demonstrable experience in developing sophisticated software for complex scientific instruments or automated machinery.\nExtensive experience with:Python\nQt\nGit, GitHub\nWindows\nAsynchronous programming\nImage processing; ImageJ\nSerial port communication\nAgile methodologies\n\nWhat We Offer:\nCompetitive salary and benefits package.\nOpportunity to work on groundbreaking technology and novel therapeutics.\nCollaborative and inclusive work environment.\nProfessional development and growth opportunities.\nProtillion is an equal opportunity employer. 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