{"id":3859243,"url":"https://alion.io/job/ultima-genomics-sr-software-integration-engineer","title":"Sr. Software Integration Engineer","company":{"id":687178,"name":"Ultima Genomics","domain":"ultimagenomics.com","url":"https://alion.io/company/ultimagenomics","size_band":"51-200","is_staffing_agency":false,"employer_type":"direct","is_intermediary":false,"listed_via":null,"ats_vendor":"Greenhouse","truth_index":{"grade":"A","score":90,"open_postings":14,"ghost_share":0,"stale_share":0.214,"repost_share":0,"time_to_fill_p50_days":91,"computed_at":"2026-11-07T05:47:08Z"}},"role":"Backend","role_family":"Backend","seniority":"senior","employment_type":"full_time","work_mode":"remote","remote_scope":"stated_countries","remote_scope_basis":"board_field","remote_working_hours":null,"hiring_geo_confidence":"structured","locations":[],"countries":[],"hiring_countries":["US"],"hiring_countries_total":1,"salary":{"min":120000,"max":160000,"currency":"USD","period":"year","gross":null,"usd_annual":160000},"salary_estimate":null,"experience_years_min":5,"visa_sponsorship":false,"relocation_package":false,"has_equity":false,"technologies":[{"name":"AI Agents","optional":false},{"name":"Confluence","optional":false},{"name":"Copilot","optional":false},{"name":"Function Calling","optional":false},{"name":"GitHub","optional":false},{"name":"Jira","optional":false},{"name":"Linux","optional":false},{"name":"LLM","optional":false},{"name":"Monday.com","optional":false},{"name":"Python","optional":false},{"name":"AWS","optional":true}],"status":"live","first_seen_at":"2026-11-06T06:50:59Z","employer_posted_date":"2026-11-06","last_verified_at":"2026-11-07T10:16:14Z","board_verified":true,"closed_at":null,"days_open":1,"trust":{"level":"ok","repost_count":null,"flags":[],"days_open":1},"description":"Rapidly Growing Life Sciences Technology Company\nUltima Genomics is a rapidly growing company that is developing ground-breaking genomics technologies. Our mission is to continuously drive the scale of genomic information to enable unprecedented advances in biology and improvements in human health. We have developed a foundational new approach to sequencing at scale that overcomes limitations due to the high costs of current technologies. We are well-funded and have raised approximately $600 million from global top-tier investors. Our team brings together unique and diverse expertise across multiple disciplines, from healthcare and life sciences, to engineering, to technology and software and beyond. We are a collaborative group, including successful entrepreneurs, chemists, hardware and software engineers, genomics and biotechnology experts, molecular and computational biologists, software and algorithm experts, and operations and commercial leaders. Join us to develop and commercialize technologies that unleash the power of genomics at scale and empower the future of human health. \nWe are looking for a highly motivated Senior Software Integration Engineer to join our team! \nAs a Senior Software Integration Engineer, you will design and build agents and automated solutions for software integration, testing, release and deployment processes, and will create an authoritative software knowledge base resource for the organization. The ideal candidate is a builder who can translate ambiguous processes into reliable automated systems, and a systems thinker who can turn complex technical information into clear, discoverable structure.\nThis is a full-time remote position with a preferred location in SF Bay Area.\nHow You'll Contribute\nDesign, build, and maintain AI agents and automated workflows that track software availability, release readiness, testing, and deployment status across many individual software components. Ensure robust orchestration, error handling, and observability to surface failures and edge cases\nBuild and maintain a structured knowledge base to serve as the single source of truth for the software estate that can be queried by agents\nIntegrate with Atlassian tools (Jira, Confluence), GitHub, Microsoft 365 (Teams, Copilot), Monday.com, and internal systems\nBuild connectors and middleware between AI agents and internal or third-party systems as needed to automate data exchange and process handoffs\nIndependently identify and execute on automation opportunities in software management\nOther job duties as assigned\nQualifications, Skills, Knowledge & Abilities\nBS/BA in computer science or an engineering discipline\n5+ years of software engineering experience, including experience building and maintaining automation or workflow orchestration systems\nProficiency in shell scripting and at least one high-level programming language such as Python in a Linux environment\nExperience building AI agents or LLM-powered applications using agent frameworks or LLM APIs, including tool use and orchestration\nExperience integrating with APIs such as Atlassian (Jira, Confluence), GitHub, Microsoft 365 (Teams, Copilot), or Monday.com\nUnderstanding of software release, QA, and/or deployment processes is a plus\nExperience with cloud computing infrastructure such as AWS is desirable\nExcel in collaborating both within and across teams\nExcellent written and verbal communication skills\nAt Ultima Genomics, your base pay is one part of your total compensation package. This role pays between $120,000 and $160,000, if performed in the US, and your actual base pay will depend on your skills, qualifications, experience, and location. Please note that the compensation details listed in US role postings reflect the base salary only, and do not include bonus, equity, or benefits. This role is also eligible for a competitive benefits package that includes: medical, dental, vision, life, and disability insurance; 401(k) retirement plan; flexible spending & health savings account; paid holidays; paid time off; employee assistance program; and other company benefits.\nUltima Genomics is proud to be an equal opportunity workplace and is an affirmative action employer. We provide equal employment opportunity for all applicants and employees. We do not discriminate on the basis of race, color, religion, sex (including pregnancy, childbirth, or related medical conditions), gender identity, gender expression, national origin, ancestry, citizenship, age, physical or mental disability, military or veteran status, marital status, domestic partner status, sexual orientation, genetic information, or any other basis protected by applicable laws. See also Ultima Genomics’ EEO Policy and Know Your Rights. 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