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What Happens When You Model Human Societies into a Card Game
Version 0.1 the first print from github.com/otaviogood I have a kid now, and so do a few people I've worked closely with for years. We started talking about sampling bias-not in models, but in life. The neighborhoods we're raising our kids in, places like
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Where Art Meets Science: The Communities Behind Biological Visualizations
Ever since my time in a crystallography lab, I've been fascinated by the process of translating raw diffraction patterns into detailed structural models. I recently won an auction for a fairly worn, but very nostalgic 80s BYTE magazine. Don't you just lov
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Creating a Video Game Wedding Invite with Adafruit EdgeBadge and PyBadge LC
Twenty years ago, my spouse-to-be and I met and became friends. During the pandemic, we got engaged and wanted to create a unique and memorable wedding invitation for our friends and family. Due to a chip shortage, we used both Adafruit EdgeBadge and PyBa
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E-ink Dev board to track Fetal Development
Partner is pregnant, ultrasound looked cool. Had an e-ink dev board collecting dust. So here we are. Pretty simple stuff, the board is an Adafruit MagTag. And all we needed to do was have a progress bar, some graphics, and some text. There are some useful
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Totally Tubular: Carbon Nanotubes, Microtubules, & Computation
Showing traditional carbon nanotube made only with carbon, versus microtubules found in cells made with Tubulin proteins. You've all heard of carbon nanotubes. You know, really small tubes made of just carbon atoms; maybe they're good for moving electrons
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Alignment-free RNA-seq Differential Gene Expression Analysis with Kallisto & Sleuth
Fig 1: Hadfield et al. https://doi.org/10.1038/s41576-019-0150-2 More and more, as we begin to get a solid grasp on DNA sequencing people are finding the need to understand what makes each type of cell different, or what changes occur before/after the int
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RNA sequencing: the teenage years
Over the past decade, RNA sequencing (RNA-seq) has become an indispensable tool for transcriptome-wide analysis of differential gene expression and differential splicing of mRNAs. However, as next-generation sequencing technologies have developed, so too
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Adafruit PyBadge and PyBadge LC
What's the size of a credit card and can run CircuitPython, MakeCode Arcade or Arduino? That's right, its the Adafruit PyBadge!
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The landmark lectures of physicist Erwin Schrödinger helped to change attitudes in biology
Influence of Erwin Schrödinger's book 'What is Life?' celebrated and discussed 75 years on.
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Retooling Analysis Pipelines from Human to EBOV NGS Data for Rapid Alignment and Strain Identification
Can we use pipelines developed for human NGS analysis and quickly apply them for viral analysis? With ebolavirus being in the news, it seemed like a good time to try. Just as with a human sequencing project, it's helpful if we have a good reference genome
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