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Overview
This is quantixed, a data analysis web resource. The focus of this site is on quantitative aspects of doing science and cell biology.
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New Frontier
Remember the "AI rat penis" incident at Frontiers in Cell & Developmental Biology? What "AI rat penis" incident? (click here if you don't remember)+ In Feb 2024, Frontiers in Cell & Developmental Biology published a review paper with two comically bad AI-
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Colorblind II: Microscopy images and colour blindness
How can we make microscopy images accessible to everyone, including those who have colour deficiencies in vision? I've written previously about a tool to check figures for accessibility. There is also helpful guidance out there (and here). With increased
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Tips from the Blog XVIII: extracting segmented objects in ImageJ
Niche tips are the bedrock of quantixed. Here is another. Posted purely because we reran into this problem and had to refigure out the answer. Problem We have a segmented image. Each object has a unique integer assigned as a pixel value. How do we get a l
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Eruption: announcing new R package VolcanoPlotR
This is a short post to announce the release of an R package, VolcanoPlotR. Code Documentation Background Using proteomics, we often want to compare two experimental groups. A popular way to visualise this comparison this is via a volcano plot, where the
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